Dr. Tapati Basak Professor, Department of Statistics and Data Science
PROFILE
SHORT BIOGRAPHY
Tapati Basak, born in 1979, obtained her B.Sc. (Honors) and M.Sc. degree in Statistics from the Department of Statistics, Jahangirnagar University, Savar, Dhaka, Bangladesh in 1999 and 2000, respectively.
She stood 1st class 1st position both in Honors and Masters program. Also, she was the topper among all the departments during the Masters program tenure and achieved “Dr. Surat Ali Khan Gold Medal” for her outstanding academic excellence.
In the year 2021, she scored her PhD major in Genetics from the Unit of Statistical Genetics, Graduate School of Medicine, Kyoto University, Japan, one of the top-ranking universities in the world, with full bright MEXT scholarship.
Her PhD work was focused on developing statistical theory which can be applied as an improvement over the existing genetic association studies. This theory was evaluated for the human DNA sequencing real genotype data.
She was also an academic staff and global online genetics course (edX) assistant in the Unit of Statistical Genetics, Kyoto University from 2015 to 2019.
She has been working as a faculty at Jahangirnagar University since 2006 in the Department of Statistics.
She also had been working as an Officer in BRAC Bank Limited, Bangladesh for about two years during her early ages of service years.
Dr. Basak is focusing her research on Statistical Genetics and Bioinformatics.
Visiting Faculty Member:
- Department of Public Health and Informatics, Bangabandhu Sheikh Mujib Medical University (BSMMU), Dhaka, Bangladesh.
Advosory Board Member:
- Data Monitoring Committee: Project on "Improving psychological well-being through stress reduction among parents having children with neurodevelopmental disorders: A multi-pronged interventions in Bangladesh", Bangabandhu Sheikh Mujib Medical University (BSMMU), December 2022 - till present.
RESEARCH INTEREST
Statistical Genetics; Bioinformatics
JOURNAL PAPER
Labiba Rahman, Tapati Basak, Measuring the strength of Linkage Disequilibrium for the co-segregation of SNP pairs using D', World Scientific News, 180, pp.151-162, 2023.Pranto Roy, Sajjad Bin Sogir, Tapati Basak, On the Polymorphism Information Content (PIC) – A Practical Application for the DNA Sequencing Data, European Journal of Medical and Health Research, 1, 1, August 2023. doi: https://ejmhr.com/index.php/journal/article/view/4
Sajjad Bin Sogir, Pranto Roy, Tapati Basak, Fundamentals of Pedigree Visualization and Feature Extraction for the Autosomal Dominant Inheritance Pattern., Asian Journal of Basic Science & Research, 5, 2, pp.73-82, June 2023. doi: http://doi.org/10.38177/AJBSR.2023.5207
Ummay Tania Akter, Sajjad Bin Sogir, Tapati Basak., On the Basics of Pedigree Visualization and Feature Extraction for the Autosomal Recessive Inheritance Pattern., American Journal of Laboratory Medicine., 8, 1, pp.4-12., May 2023. doi: http://www.ajlabmed.org/article/235/10.11648.j.ajlm.20230801.12
Labiba Rahman, Tapati Basak, On the correlation of SNP pairs as a measure of genetic Linkage Disequilibrium, World Scientific News, 175, December 2022.
Muhammad Abdur Razzaqe, Tapati Basak, Text mining in unstructured text: techniques, methods and analysis, World Scientific News, 174, November 2022.
Tapshir Jahan Setu, Tapati Basak, An Introduction to Basic Statistical Models in Genetics, Open Journal of Statistics, 11, December 2021. doi: https://doi.org/10.4236/ojs.2021.116060
Tapati Basak, Nipa Roy, A Preliminary Outline of the Statistical Inference Process in Genetic Association Studies, Open Journal of Statistics, 12, April, 2022. doi: https://doi.org/10.4236/ojs.2022.122014
Tapati Basak, On the Different Ways to Handle the Trend of Disease Risk in Genetic Association Tests, Open Journal of Statistics, Open Journal of Statistics, 12, pp.521-531, August 19, 2022. doi: https://doi.org/10.4236/ojs.2022.124031
Ryo Yamada, Daigo Okada, Juan Wang, Tapati Basak, Satoshi Koyama, Interpretation of omics data analyses, Journal of Human Genetics, Springer Nature, May, 2020. doi: https://doi.org/10.1038/s10038-020-0763-5
Tapati Basak, Kazuhisa Nagashima, Satoshi Kajimoto, Takahisa Kawaguchi, Yasuharu Tabara, Fumihiko Matsuda, Ryo Yamada, A Geometry‑Based Multiple Testing Correction for Contingency Tables by Truncated Normal Distribution, Statistics in Biosciences, Springer Nature, March, 2020. doi: https://doi.org/10.1007/s12561-020-09271-6
CONFERENCE PAPER
Tapati Basak, Rumana Rois, Ajit Kumar Majumder,, One-Sided Version of the Breusch- Godfrey Test for Testing Higher Order Autocorrelation - A Distance-Based Approach., Proceedings of the Two One-day Seminars, Bangladesh Statistical Association,, pp.237-246., Dhaka, 2005.AWARD
Tapati Basak, Dr. Surat Ali Gold Medal, by the authority of Jahangirnagar University, For securing the highest marks in the M.Sc. Examination 2000 of Jahangirnagar University, Savar, Dhaka-1342, Bangladesh.,WORKSHOP
The 6th Kyoto Course on Bioinformatics for Genomic Medicine Course on Computational Genomics, KYOTO COURSE ON BIOINFORMATICS FOR GENOMIC MEDICINE, Kyoto University, Japan, October 2 – October 5, 2018.- Different practical demonstration on Bioinformatics.
- Different practical demonstration on Bioinformatics.
- Massively-parallel sequencing in Human Genetics
- Applications to Human Genetics
- Computational and Statistical methods for Next-Generation Sequencing (NGS) data
- Massively-parallel sequencing in Human Genetics
- Applications to Human Genetics
- Computational and Statistical methods for Next-Generation Sequencing (NGS) data
Contact
Dr. Tapati Basak
Professor
Department of Statistics and Data Science
Jahangirnagar University, Savar, Dhaka-1342, Bangladesh.
Email: tapati.basak@juniv.edu
